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September 18, 2025 8 min read

Did you know your gut is often called the body’s “second brain”? Growing research indicates that the gut microbiome and mental health are closely linked, sparking interest in how gut health may influence mood, focus, and the body’s response to stress.

The gut is home to trillions of bacteria and other microbes that not only support digestion but also send signals that may influence brain health and emotional balance. When this balance shifts, it can change how people feel physically and mentally.

What follows is a closer look at how gut microbes influence the brain, the importance of the gut-brain axis, and everyday habits that can nurture both body and mind.

What Is the Gut Microbiome?

The gut microbiome is the community of trillions of bacteria, fungi, and other microbes that live in the digestive tract. This ecosystem supports digestion, immunity, and even communication between the gut and brain. Researchers see the gut microbiome and mental health as connected through several pathways.

Why do bacteria live in your gut?

Gut bacteria and other microbes thrive in the gastrointestinal tract because it offers warmth, nutrients, and a stable environment. These organisms help break down food, produce short-chain fatty acids, and contribute to a healthy gut lining2. Research suggests they play a key role in how the gut functions.

What roles does the gut microbiome play in health?

Gut microbiota help digest complex foods, support immune activity, and interact with the central nervous system. A balanced gut microbial composition aids in energy extraction, vitamin production, and signaling that may affect mood and brain health. By contrast, gut microbiota imbalances have been studied in conditions such as irritable bowel syndrome, inflammatory bowel disease, and mood-related concerns1.

Gut illustration with bacteria representing gut microbiome and mental health research

How Are the Gut and Brain Connected?

The gut and brain communicate through a two-way system, often referred to as the microbiota-gut-brain axis3. This pathway allows gut bacteria to send signals that may shape brain activity, while the brain also sends responses that influence gut health.

What is the gut-brain axis?

The gut-brain axis links the enteric nervous system in the digestive tract with the central nervous system. Messages travel through nerves, hormones, and immune pathways, creating ongoing communication between the gut and the brain. Researchers suggest this complex exchange may play a role in emotional balance and overall well-being.

How does gut bacteria affect your nervous system?

Gut bacteria create compounds, including neurotransmitters, that can interact with the nervous system. Some microbes are involved in serotonin production in the gut, which scientists are studying for their possible connection to mood regulation. Others interact with the vagus nerve, a direct line of communication between the gut and brain. Research also explores how gut bacteria may influence brain-derived neurotrophic factor, a protein important for brain development and cognitive function.

How Does Gut Health Affect Mental Health?

Shifts in gut microbiota composition may influence how people experience mood and stress. While research is still developing, many studies point to connections between gut balance and aspects of mental well-being.

Can gut issues contribute to anxiety and depression?

Research has found that people with depression or anxiety often have gut microbiota patterns that differ from those without these conditions. A systematic review reported that individuals with these mental health concerns may show higher levels of proinflammatory bacterial species and lower levels of bacteria that produce short-chain fatty acids. Scientists suggest that this may play a role in the relationship between inflammation, gut-brain communication, and mood (Simpson et al., 2020)4.

Does gut health influence stress levels?

Gut health can influence how the body responds to stress hormones, such as cortisol. Evidence suggests that gut microbiota interact with the nervous, endocrine, and immune systems, which in turn can influence how the body responds to stress. Imbalances in the gut have been associated with increased inflammatory activity and potential changes in the blood–brain barrier, processes that researchers link to mood and stability (Tang et al., 2020)5.

How does the gut affect memory and focus?

Studies suggest gut microbes may influence brain functions such as memory and concentration. Some research has observed associations between specific gut microbiota and measures of cognitive performance, although this field is still in its early stages. A diverse gut microbiota may support overall cognitive function, while disruptions could be connected to reduced focus or “brain fog.”

Man concentrating at desk showing link between gut microbiome and mental health

Signs Your Gut Microbiome May Be Out of Balance

Shifts in gut microbial composition can sometimes show up in both physical and emotional ways. Paying attention to these changes may give insight into when your gut health needs extra support.

Digestive symptoms

Digestive concerns linked with gut microbiota dysbiosis may include bloating, irregular bowel movements, or food sensitivities. Some people also experience discomfort associated with conditions such as irritable bowel syndrome or inflammatory bowel disease, both of which involve changes in the human gut microbiome.

Emotional symptoms

Emotional signs of gut imbalance may include frequent low mood, heightened stress, or mental fatigue often described as “brain fog.” These experiences can overlap with broader mental health concerns, suggesting how gut microbes may influence emotional balance.

Best Ways to Support Gut Health for Mental Wellness

Supporting gut health can be as simple as adjusting daily diet and lifestyle habits. Choices that nourish a healthy gut may also enhance mental health and overall well-being.

Which foods are good for your gut and brain?

Eating nutrient-rich foods can promote gut microbiota diversity and supply compounds that also support brain health. Here are some examples:

  • Yogurt and kefir – provide probiotics that add beneficial gut bacteria.

  • Sauerkraut and other fermented foods – create compounds that may support digestion and mood balance.

  • Fiber-rich fruits and vegetables – supply prebiotics that feed healthy gut microbes.

  • Legumes – offer fiber and plant-based proteins that foster a healthy gut environment.

  • Whole grains – contribute to short-chain fatty acid production linked to gut and brain health.

  • Mediterranean diet foods – emphasize vegetables, olive oil, nuts, and fish, which are often associated with positive health outcomes.

What role do probiotics and prebiotics play?

Probiotics are live bacteria that can help build a more diverse gut microbiota, while prebiotic foods, such as garlic, onions, and bananas, act as fuel for these microbes. Together, they may help shape gut microbial balance and support overall well-being. Dietary approaches that incorporate both are being studied for their potential impact on mood and mental health, although research is ongoing.

Can lifestyle habits improve gut and mental health?

Daily habits can have a significant effect on both gut function and emotional wellness. Adequate sleep, hydration, and regular exercise contribute to a healthier gut microbiota. Practices such as mindfulness or yoga may also help manage feelings of stress and support the gut-brain connection over time.

Woman holding stomach highlighting gut microbiome and mental health connection

The Science Behind Gut Microbiome and Mental Health

Research into the human gut microbiome and mental health is still in its early stages, but current findings highlight the complexity of this relationship.

What do studies say so far?

Studies suggest that differences in gut microbiota composition may be associated with depressive symptoms, mood changes, and aspects of cognitive health. While the results are encouraging, scientists emphasize that this is an evolving field and not all outcomes apply broadly.

Which gut bacteria strains are linked to mental wellness?

Strains such as Lactobacillus and Bifidobacterium are often studied for their potential role in supporting mental well-being. Research suggests that they may contribute to the production of neurotransmitters or short-chain fatty acids that interact with the brain; however, further studies are needed to clarify how these effects relate to mental health.

What do experts say about future research?

Experts note that the gut microbiome’s connection to mental health may have an important role in overall human wellness. Future research is expected to investigate how dietary interventions, prebiotic foods, or other strategies that modulate the gut microbiota may influence emotional balance. For now, researchers suggest focusing on balanced eating and healthy lifestyle habits while this science continues to develop.

Woman drinking water on beach supporting gut microbiome and mental health

Everyday Tips to Strengthen the Gut-Brain Connection

Simple daily choices can support the microbiota gut-brain axis and may play a role in both gut and mental wellness over time.

Try mindful eating

Eating slowly and paying attention to each bite can support healthy digestion and may encourage a steadier mood. This practice also allows the enteric nervous system to function more smoothly, which helps maintain balanced gut-brain communication.

Manage stress naturally

Finding ways to manage feelings of stress is important for overall well-being. Practices like meditation, breathing exercises, or yoga are being studied for how they may influence stress responses and gut health.

Limit processed foods and excess sugar

Processed foods and diets high in sugar may disrupt a healthy gut microbiota and are linked with less favorable health outcomes. Choosing more whole grains, vegetables, and other nutrient-dense foods can help support gut balance and cognitive function.

Supporting Gut and Mental Health Together

The connection between the gut microbiome and mental health highlights how diet, lifestyle, and daily habits can influence mood, focus, and overall well-being. Simple steps, such as eating fermented foods, adding prebiotic-rich options, managing daily stressors, and staying active, can all contribute to maintaining a healthy gut microbiota and supporting brain health. While research on the gut-brain axis continues to grow, caring for gut health is one way to promote overall mental well-being. If feelings of depression or anxiety become overwhelming, seeking professional guidance remains an important step.

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Frequently Asked Questions

Can the gut microbiome affect mental health?

Yes, research suggests the gut microbiome and mental health are linked through the gut-brain axis, which can influence mood and stress responses.

What foods improve gut health and mental well-being?

Fermented foods, fiber-rich vegetables, fruits, and whole grains support a healthy gut microbiota and may contribute to better overall wellness.

How does gut bacteria influence mood disorders?

Gut bacteria can produce neurotransmitters and short-chain fatty acids, which researchers are exploring for their potential influence on mood and mental health.

Does stress change the gut microbiota composition?

Chronic stress may disrupt gut microbiota diversity and affect the communication between the gut and brain.

Can probiotics help with depression and anxiety?

Some studies suggest probiotics may support gut health and could play a role in mood-related research, but they are not a treatment for depression or anxiety.

References

  1. Carding, S., Verbeke, K., Vipond, D. T., Corfe, B. M., & Owen, L. J. (2015). Dysbiosis of the gut microbiota in disease. Microbial Ecology in Health and Disease, 26, 26191. https://doi.org/10.3402/mehd.v26.26191

  2. Fusco, W., Lorenzo, M. B., Cintoni, M., Porcari, S., Rinninella, E., Kaitsas, F., Lener, E., Mele, M. C., Gasbarrini, A., Collado, M. C., Cammarota, G., & Ianiro, G. (2023). Short-chain fatty-acid-producing bacteria: Key components of the human gut microbiota. Nutrients, 15(9), 2211. https://doi.org/10.3390/nu15092211

  3. Margolis, K. G., Cryan, J. F., & Mayer, E. A. (2021). The microbiota-gut-brain axis: From motility to mood. Gastroenterology, 160(5), 1486–1501. https://doi.org/10.1053/j.gastro.2020.10.066

  4. Simpson, C. A., Diaz-Arteche, C., Eliby, D., Schwartz, O. S., Simmons, J. G., & Cowan, C. S. M. (2021). The gut microbiota in anxiety and depression: A systematic review. Clinical Psychology Review, 83, 101943. https://doi.org/10.1016/j.cpr.2020.101943

  5. Tang, W., Zhu, H., Feng, Y., Guo, R., & Wan, D. (2020). The impact of gut microbiota disorders on the blood-brain barrier. Infection and Drug Resistance, 13, 3351–3363. https://doi.org/10.2147/IDR.S254403


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